Resources

Links

The software and references this database is built on. Everything here is free for academic use and maintained by its own community — each card opens the project's own site in a new tab.

Tooling

Software

12 tools

Samtools Samtools is a suite of programs for interacting with high-throughput sequencing data. Bowtie 2 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. WGCNA WGCNA: an R package for weighted correlation network analysis. GENIE3 GEne Network Inference with Ensemble of trees. Python Python is a programming language that lets you work quickly and integrate systems more effectively. Gephi Gephi is the leading visualization and exploration software for all kinds of graphs and networks. Scikit-learn Machine Learning in Python. Flask Flask is a lightweight and flexible Python web framework that is designed for building web applications quickly. Bootstrap Powerful, extensible, and feature-packed frontend toolkit. BLAST Basic Local Alignment Search Tool. SequenceServer BLAST servers for custom and standard data. Jbrowse2 The next-generation genome browser.

Data

Genome Reference

Pyrus bretschneideri 'Dangshansuli' The first draft genome sequence of the pear cv. 'Dangshansuli' (P. bretschneideri Rehd.), also known as Chinese white pear (Asian pear).